Selected Publications

May 15, 2024.

Prashant Kaushal, Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado, Sara K. Makanani, Sophie F. Blanc, Decan M. Winters, Jiewei Xu, Benjamin Polacco, Yuan Zhou, Erica Stevenson, Manon Eckhardt, Lorena Zuliani-Alvarez, Robyn Kaake, Danielle L. Swaney, Nevan Krogan, Mehdi Bouhaddou. 2024. “Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry.” ArXiv

Sept 21, 2023. Volume 186, Issue 21, p4597-4614.e26

Bouhaddou M, Reuschl AK, Polacco BJ, Thorne LG, Ummadi MR, Ye C, Rosales R, Adrian Pelin, Jyoti Batra, Gwendolyn M. Jang, Jiewei Xu, Jack M. Moen, Alicia L. Richards, Yuan Zhou, Bhavya Harjai, Erica Stevenson, Ajda Rojc, Roberta Ragazzini, Matthew V.X. Whelan, Wilhelm Furnon, Giuditta De Lorenzo, Vanessa Cowton, Abdullah M. Syed, Alison Ciling, Noa Deutsch, Nevan J. Krogan, 2024. “SARS-CoV-2 variants evolve convergent strategies to remodel the host response.” Cell

Dec 23, 2021. Volume 602, Issue 7898, p487–495

Lucy G. Thorne, Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Ben Polacco, Adrian Pelin, Jyoti Batra, Matthew V. X. Whelan, Myra Hosmillo, Andrea Fossati, Roberta Ragazzini, Irwin Jungreis, Manisha Ummadi, Ajda Rojc, Jane Turner, Marie L. Bischof, Kirsten Obernier, Hannes Braberg, Margaret Soucheray, Alicia Richards, Kuei-Ho Chen, Bhavya Harjai, Danish Memon, Joseph Hiatt, …Nevan J. Krogan, 2022. “Evolution of Enhanced Innate Immune Evasion by SARS-CoV-2.” Nature

Oct 22, 2021. Volume 6, Issue 20

Mehdi Bouhaddou, Rex H. Lee, Hua Li, Neil E. Bhola, Rachel A. O’Keefe, Mohammad Naser, Tian Ran Zhu, Kelechi Nwachuku, Umamaheswar Duvvuri, Adam B. Olshen, Ritu Roy, Aaron Hechmer, Jennifer Bolen, Stephen B. Keysar, Antonio Jimeno, Gordon B. Mills, Scott Vandenberg, Danielle L. Swaney, Daniel E. Johnson, Nevan J. Krogan, Jennifer R. Grandis, 2021. “Caveolin-1 and Sox-2 Are Predictive Biomarkers of Cetuximab Response in Head and Neck Cancer.” JCI Insight

Oct 1, 2021. Volume 374, Issue 6563

Minkyu Kim, Jisoo Park, Mehdi Bouhaddou, Kyumin Kim, Ajda Rojc, Maya Modak, Margaret Soucheray, Michael J. McGregor, Patrick O’Leary, Denise Wolf, Erica Stevenson, Tzeh Keong Foo, Dominique Mitchell, Kari A. Herrington, Denise P. Muñoz, Beril Tutuncuoglu, Kuei-Ho Chen, Fan Zheng, Jason F. Kreisberg, Morgan E. Diolaiti, John D. Gordan, Jean-Philippe Coppé, Danielle L. Swaney, Bing Xia, Laura van ’t Veer, Alan Ashworth, Trey Ideker, Nevan J. Krogan, 2021. “A Protein Interaction Landscape of Breast Cancer.” Science

Jan 07, 2021. Volume 184, Issue 1, p106-119.e14

Ruofan Wang, Camille R. Simoneau, Jessie Kulsuptrakul, Mehdi Bouhaddou, Katherine A. Travisano, Jennifer M. Hayashi, Jared Carlson-Stevermer, James R. Zengel, Christopher M. Richards, Parinaz Fozouni, Jennifer Oki, Lauren Rodriguez, Bastian Joehnk, Keith Walcott, Kevin Holden, Anita Sil, Jan E. Carette, Nevan J. Krogan, Melanie Ott, Andreas S. Puschnik , 2021. “Genetic Screens Identify Host Factors for SARS-CoV-2 and Common Cold Coronaviruses.” Cell

Oct 15, 2020. Volume 270, Issue 6521

David E. Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V. Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S. Jureka, Kirsten Obernier, Jeffrey Z. Guo, Jyoti Batra, Robyn M. Kaake, Andrew R. Weckstein, Tristan W. Owens, Meghna Gupta, Sergei Pourmal, Erron W. Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J. O’Meara, Tia A. Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Dmitry Kuchenov, Ruth Hüttenhain, …, Nevan J. Krogan, 2020. “Comparative Host-Coronavirus Protein Interaction Networks Reveal Pan-Viral Disease Mechanisms.” Science

Aug 06, 2020. Volume 182, Issue 3, p533-786

Mehdi Bouhaddou, Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel Correa Marrero, Benjamin J. Polacco, James E. Melnyk 21, Svenja Ulferts, Robyn M. Kaake, Jyoti Batra, Alicia L. Richards, Erica Stevenson, David E. Gordon, Ajda Rojc, Kirsten Obernier, Jacqueline M. Fabius, Margaret Soucheray, Lisa Miorin, Elena Moreno, Cassandra Koh, …, Nevan J. Krogan, 2020. “The Global Phosphorylation Landscape of SARS-CoV-2 Infection.” Cell

Apr 30, 2020. Volume 583, Issue 7816, p459–468

David E. Gordon, Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M. White, Matthew J. O’Meara, Veronica V. Rezelj, Jeffrey Z. Guo, Danielle L. Swaney, Tia A. Tummino, Ruth Hüttenhain, Robyn M. Kaake, Alicia L. Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J. Polacco, Hannes Braberg, Jacqueline M. Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J. Bennett, Merve Cakir, Michael J. McGregor, Qiongyu Li, …, Nevan J. Krogan, 2020. “A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug Repurposing.” Nature

Mar 26, 2018.

Mehdi Bouhaddou, Anne Marie Barrette, Alan D. Stern, Rick J. Koch, Matthew S. DiStefano, Eric A. Riesel, Luis C. Santos, Annie L. Tan, Alex E. Mertz, and Marc R. Birtwistle. 2018. “A Mechanistic Pan-Cancer Pathway Model Informed by Multi-Omics Data Interprets Stochastic Cell Fate Responses to Drugs and Mitogens.” PLoS Computational Biology

For a full list of publications, check out our Google Scholar page.